Treatment For H. Pylori Didn't Work. Now What?

In our latest question and answer, the pharmacist discusses what to do if your initial treatment for an H. Pylori infection doesn't work.

Question

My doctor has me on treatment with Prilosec, clarithromycin, and amoxicillin for acid reflux. I have finished the treatment and pills last Wednesday. The issue is that I have some effects still and still feel some acid reflux, but not as much now. Should I ask for a refill or am I missing something?

Asked by Emilio On Dec 06, 2022

Answered by
Medical Content Reviewed By HelloPharmacist Staff

Published Dec 07, 2022
Last updated May 04, 2024

Key points

  • H. Pylori infections are most commonly treated initially with 'triple therapy', which includes amoxicillin, clarithromycin, and a proton pump inhibitor, like Prilosec.
  • Studies indicate that nearly 20% of individuals fail initial treatment for H. Pylori. There are several alternative therapies that can be utilized if your first treatment fails.

Answer

Thanks so much for reaching out! Based on the medications you stated you are taking in your question (amoxicillin, clarithromycin, and Prilosec [omeprazole]), I'm assuming you are being treated for more than acid reflux.

That combination of medications (two antibiotics and a proton pump inhibitor) is a common treatment regimen for an H. Pylori infection. It is known as 'triple therapy' and is generally given for 14 days.

I don't know if you have been tested for H. Pylori, which was confirmed positive, or if your doctor has simply given you empiric treatment (assumed diagnosis, but not confirmed with testing).

Nevertheless, since you state you are continuing to have symptoms, it is important to discuss this with your doctor.

Assuming you are being treated for an active H. Pylori infection, studies suggest that nearly 20% of individuals fail initial treatment, so you aren't alone. 

In the next section, I discuss some options for the treatment of H. Pylori if you failed the initial treatment, which it seems like you may have.

H. Pylori Treatment Failure - Next Steps

As mentioned, failing initial treatment for H. Pylori isn't uncommon, and there are plenty of reasons why it could occur, including:

  • Poor medication adherence

  • Microbial resistance to antibiotics (common with clarithromycin)

  • Inadequate suppression of stomach acid

The therapy you were started on (amoxicillin, clarithromycin, and Prilosec) is the most common initial therapy. If that fails, which could be for any of the reasons I mentioned above, there are alternative treatments available. These treatments include:

  • Bismuth quadruple therapy: Bismuth subsalicylate, metronidazole, tetracycline, and a proton pump inhibitor (like Prilosec) given for 14 days

  • Concomitant therapy: Clarithromycin, amoxicillin, metronidazole, and a proton pump inhibitor for 10-14 days

  • Hybrid therapy: Amoxicillin and a PPI for seven days followed by amoxicillin, clarithromycin, a nitroimidazole, and a proton pump inhibitor for 7 days

  • Levofloxacin triple therapy: Levofloxacin, amoxicillin, and a proton pump inhibitor for 10 to 14 days

  • Levofloxacin quadruple therapy: Levofloxacin, omeprazole, metronidazole, and doxycycline for 10-14 days

  • Levofloxacin sequential therapy: Amoxicillin and a proton pump inhibitor for five to seven days followed by levofloxacin, amoxicillin, metronidazole, and a proton pump inhibitor for 5-7 days.

  • Rifabutin triple therapy: Rifabutin, amoxicillin, and a proton pump inhibitor twice daily for 14 days.

As you can see, there are plenty of alternative regimens you could try since your first treatment didn't work. I urge you to connect with your doctor about how you are feeling and to be re-evaluated.

Your doctor can perform tests to confirm your infection has been adequately treated. Tests include:

It is important to point out here too that generally a proton pump inhibitor, when used as part of a treatment plan to treat H. Pylori, should be given twice daily, especially if your first treatment ended in failure.

Final Words

I hope you found this answer helpful. I am making an educated guess about what you are treating based on the drugs you gave me, so please, if you have any further questions or clarifications to send my way, please do so.

References

  • Clinical practice. Helicobacter pylori infection., PubMed
  • American College of Gastroenterology guideline on the management of Helicobacter pylori infection., PubMed
  • Bismuth-based quadruple therapy using a single capsule of bismuth biskalcitrate, metronidazole, and tetracycline given with omeprazole versus omeprazole, amoxicillin, and clarithromycin for eradication of Helicobacter pylori in duodenal ulcer patients: a prospective, randomized, multicenter, North American trial, PubMed
  • ACG Clinical Guideline: Treatment of Helicobacter pylori Infection, PubMed
  • Update on non-bismuth quadruple (concomitant) therapy for eradication of Helicobacter pylori, PubMed
  • Review: efficacy and safety of hybrid therapy for Helicobacter pylori infection: a systematic review and meta-analysis, PubMed
  • A randomized study comparing levofloxacin, omeprazole, nitazoxanide, and doxycycline versus triple therapy for the eradication of Helicobacter pylori, PubMed
  • The relationship among previous antimicrobial use, antimicrobial resistance, and treatment outcomes for Helicobacter pylori infections, PubMed
  • Review article: rifabutin in the treatment of refractory Helicobacter pylori infection, PubMed

About the Pharmacist

Dr. Brian Staiger, PharmD

Dr. Brian has been practicing pharmacy for over 13 years and has wide-ranging experiences in many different areas of the profession. From retail, clinical, program development, and administrative responsibilities, he's your knowledgeable and go-to source for all your pharmacy and medication-related questions! Dr. Brian Staiger also has herbalist training and educational certificates in the field of medical ethnobotany. Feel free to send him an email at [email protected]! You can also connect with Dr. Brian Staiger on LinkedIn.

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